![]() ![]() The command below will soft-filter variants with greater than 10% missing calls. The command below will return only variants with at least one homozygous REF and one homozygous ALT call: vk filter REF -min=1 | vk filter ALT -min=1 - | bcftools view -O z > one_ When set to x the soft-filter replaces existing filters in the FILTER column. When set to +, the filter is added to existing filters in the FILTER column. -mode=(+|x) - Specifies the mode for soft-filtering. ![]()
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